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Showing :
repeated measures
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7
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9
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5.0k
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LIMMA: interpreting interaction terms in an unbalanced factorial design with repeated measures
LIMMA
FACTORIAL
REPEATED MEASURES
differential gene expression
8.7 years ago • updated 8.6 years ago
robert.maughan
• 0
0
votes
1
reply
4.0k
views
DESeq2 - How to study time course experiment taking subject variability into account?
deseq2
repeated measures
time course
updated 6.3 years ago by
Michael Love
42k • written 6.3 years ago by
Marion
• 0
8
votes
11
replies
2.4k
views
dream vignette says limma-voom repeated measures two-group comparison needs two duplicateCorrelation rounds which differs from limma user's guide and…
dream
variancePartition
limma
differential expression
repeated measures
updated 4.6 years ago by
Gordon Smyth
50k • written 4.6 years ago by
hermidalc
▴ 20
6
votes
5
replies
2.1k
views
Incorporating subject ID as random effect for repeated measures RNA-Seq analysis
limma
rna-seq
mixed model
repeated measures
updated 5.7 years ago by
Gordon Smyth
50k • written 5.7 years ago by
mikhael.manurung
▴ 270
3
votes
2
replies
1.6k
views
Repeated Measures, Within-Subject, Between-Groups RNAseq Analysis
edgeR
rnaseq
repeated measures
updated 6.1 years ago by
Ryan C. Thompson
★ 7.9k • written 6.1 years ago by
wjh180
• 0
2
votes
5
replies
1.4k
views
SVA for repeated measures design
SVA
deseq2
repeated measures
updated 4.6 years ago by
Robert Castelo
★ 3.3k • written 4.6 years ago by
sara.blocquiaux
• 0
1
vote
2
replies
853
views
Time series experiment analysis in DEseq2 without T=0 and three independent experiments with linked samples
deseq2
rnaseq
repeated measures
time series
design formula
updated 4.3 years ago by
Michael Love
42k • written 4.3 years ago by
Dorien
▴ 10
0
votes
0
replies
851
views
Model in metagenomeSeq
repeated measures
8.6 years ago
PJ
• 0
0
votes
4
replies
592
views
DESeq2 for repeated/clustered samples
deseq2
repeated measures
updated 4.4 years ago by
Michael Love
42k • written 4.4 years ago by
jperin
• 0
9 results • Page
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Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
Comment: European Bioconductor Conference 2023 planning
by
angelaesper43
• 0
@Maria Doyle[sexdolltech][1]Hosting EuroBioC provides an excellent opportunity to showcase Bioconductor and computational biology research …
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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